STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103363255Cyclic nucleotide gated channel beta 3, tandem duplicate 2. (686 aa)    
Predicted Functional Partners:
ENSSPAP00000011094
Calmodulin-like 4a.
   
 0.862
LOC103361901
Cyclic nucleotide-binding domain-containing protein.
  
0.844
cnga3
Cyclic nucleotide gated channel subunit alpha 3a.
  
0.843
LOC103369883
Cyclic nucleotide gated channel subunit alpha 1a.
  
0.843
ENSSPAP00000002246
Cyclic nucleotide gated channel subunit alpha 1b.
  
0.842
cnga2
Cyclic nucleotide gated channel alpha 2b.
  
0.842
LOC103356095
Cyclic nucleotide gated channel subunit alpha 4.
  
0.841
LOC103355870
Cyclic nucleotide-binding domain-containing protein.
  
0.836
LOC103367853
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
   
 0.704
guca1b
Guanylate cyclase activator 1B.
   
 0.700
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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