STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBUnannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (66 aa)    
Predicted Functional Partners:
FE247_07300
Unannotated protein.
  
 0.999
FE247_11085
Unannotated protein.
       0.806
hemC
Unannotated protein; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
    0.686
FE247_11075
Unannotated protein.
       0.618
ispB
Unannotated protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.552
ispA
Unannotated protein; Belongs to the FPP/GGPP synthase family.
  
  
 0.552
FE247_04310
Unannotated protein.
  
  
 0.541
ACIB15232_1162
Unannotated protein.
       0.515
FE247_11095
Unannotated protein.
       0.515
yajC
Unannotated protein; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.
   
  
 0.507
Your Current Organism:
Arcobacter cibarius
NCBI taxonomy Id: 1442598
Other names: A. cibarius LMG 21996, Aliiarcobacter cibarius LMG 21996, Arcobacter cibarius LMG 21996
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.