STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ79669.1uroporphyrinogen-III synthase. (210 aa)    
Predicted Functional Partners:
hemC
Porphobilinogen deaminase.
 0.999
hemB
Delta-aminolevulinic acid dehydratase.
  
 0.998
hemE
Uroporphyrinogen decarboxylase.
  
 0.982
hemA
Glutamyl-tRNA reductase.
 
 
 0.936
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
    
 0.934
hemL
Glutamate-1-semialdehyde 2,1-aminomutase.
 
 
 0.912
ccsA
Cytochrome c biogenesis protein CcsA.
 
    0.819
rnc
Ribonuclease 3.
     
 0.811
lon2
Lon protease 2.
       0.810
nadE
Glutamine-dependent NAD(+) synthetase.
     
 0.754
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.