STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ79716.1Biopolymer transport protein ExbD. (140 aa)    
Predicted Functional Partners:
exbB_1
Biopolymer transport protein ExbB.
 
 0.987
CDZ79826.1
Hypothetical protein.
  
 0.964
exbB_2
Biopolymer transport protein ExbB.
  
 0.930
ribBA
Riboflavin biosynthesis protein RibBA.
   
 
 0.809
CDZ79717.1
Hypothetical protein.
       0.773
CDZ79718.1
Hypothetical protein.
       0.773
CDZ79714.1
Hypothetical protein.
  
  
 0.754
rtpR
Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase.
  
     0.570
CDZ81788.1
ResB-like family protein.
  
     0.540
ptk
Tyrosine-protein kinase ptk.
  
     0.492
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.