STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBdTDP-glucose 4,6-dehydratase. (353 aa)    
Predicted Functional Partners:
rmlA1
Glucose-1-phosphate thymidylyltransferase 1.
 
 0.999
rmlC
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 
 0.997
rfbD
dTDP-4-dehydrorhamnose reductase.
 
 0.976
tuaD
UDP-glucose 6-dehydrogenase TuaD.
 
 
 0.882
glmU
Bifunctional protein GlmU.
    
 0.880
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase.
 
 
 0.846
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
 
 
 0.820
pseC
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase.
  
 
 0.820
ycjS
Putative oxidoreductase YcjS.
  
 
 0.775
CDZ79746.1
Hypothetical protein.
  
 
 0.751
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.