STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ79920.1Rod shape-determining protein MreC. (365 aa)    
Predicted Functional Partners:
mreB
Rod shape-determining protein MreB.
  
 
 0.941
aspC_1
Aspartate aminotransferase.
       0.807
CDZ80524.1
DNA repair protein RadC.
  
  
 0.777
penA
Penicillin-binding protein 2.
  
 
 0.659
spoVD
Sporulation-specific penicillin-binding protein.
  
 
 0.655
maf
Septum formation protein Maf.
  
  
 0.616
CDZ80020.1
Bifunctional preprotein translocase subunit SecD/SecF.
  
  
 0.538
CDZ79919.1
Glycosyltransferase.
       0.515
CDZ79922.1
Hypothetical protein.
       0.457
murG
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase.
  
  
 0.446
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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