STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ80062.1Type III secretion low calcium response chaperone LcrH/SycD. (130 aa)    
Predicted Functional Partners:
CDZ80063.1
Hypothetical protein.
       0.807
ribBA
Riboflavin biosynthesis protein RibBA.
    
  0.733
CDZ81179.1
Nitrate/nitrite sensor protein NarQ.
    
  0.615
glmM
Phosphoglucosamine mutase.
    
  0.567
CDZ81166.1
Secretion system effector C (SseC) like family protein.
   
   0.524
glmS
Glutamine--fructose-6-phosphate aminotransferase [isomerizing].
       0.491
tyrP_2
Tyrosine permease.
       0.478
blh_1
Beta-lactamase hydrolase-like protein.
    
  0.408
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.