STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadMLong-chain acyl-CoA thioesterase FadM. (132 aa)    
Predicted Functional Partners:
eryA
Erythronolide synthase, modules 1 and 2.
  
 0.986
fadJ
Fatty acid oxidation complex subunit alpha.
  
 
 0.944
aas
Bifunctional protein aas.
  
 0.795
CDZ80100.1
Hypothetical protein.
       0.773
ykfA
Putative murein peptide carboxypeptidase.
       0.773
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 0.735
gdhI
Glucose 1-dehydrogenase 1.
   
  0.612
CDZ80098.1
Hypothetical protein.
       0.565
CDZ80102.1
Hypothetical protein.
       0.544
CDZ81383.1
Nitronate monooxygenase.
 
 
  0.512
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.