STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroA3-phosphoshikimate 1-carboxyvinyltransferase. (426 aa)    
Predicted Functional Partners:
aroE
Shikimate dehydrogenase.
 
 0.999
aroB
3-dehydroquinate synthase.
 
 0.999
aroC
Chorismate synthase.
 
 0.999
aroK
Shikimate kinase 1.
 
 
 0.999
cmk
Cytidylate kinase.
 
 
 0.932
CDZ81279.1
Chorismate mutase.
  
 
 0.919
asd2
Aspartate-semialdehyde dehydrogenase 2.
 
    0.800
pabB
Para-aminobenzoate synthase component 1.
 
   
 0.708
trpG
Anthranilate synthase component II.
 
   
 0.644
CDZ81895.1
Anaerobic benzoate catabolism transcriptional regulator.
    
  0.633
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.