STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ80227.1Ankyrin repeat protein. (201 aa)    
Predicted Functional Partners:
petB
Cytochrome b6.
    
  0.783
CDZ79947.1
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
   
  0.774
CDZ80226.1
Hypothetical protein.
       0.773
bicA
Bicarbonate transporter BicA.
    
  0.764
CDZ80860.1
Putative sulfate transporterc/MT1781.
    
  0.751
eno
Enolase.
    
  0.737
CDZ81340.1
Peptidyl-prolyl cis-trans isomerase cyp18.
    
  0.727
alaS
Alanine--tRNA ligase.
    
  0.723
rpsC
Hypothetical protein; BS2.
    
  0.723
aas
Bifunctional protein aas.
   
 0.720
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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