STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bioDATP-dependent dethiobiotin synthetase BioD. (209 aa)    
Predicted Functional Partners:
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase.
 
 0.999
bioB
Biotin synthase.
 
 
 0.999
bioF_1
8-amino-7-oxononanoate synthase 2.
 
 
 0.983
CDZ81609.1
Putative pyridoxal phosphate-dependent acyltransferase.
  
 
 0.826
CDZ80250.1
Hypothetical protein.
       0.807
bioF_2
8-amino-7-oxononanoate synthase 2.
  
 
 0.739
kbl
2-amino-3-ketobutyrate coenzyme A ligase.
  
 
 0.739
ribD
Riboflavin biosynthesis protein RibD.
     
 0.665
bioY2
Biotin ECF transporter S component BioY2.
  
 
 0.573
ribBA
Riboflavin biosynthesis protein RibBA.
     
 0.571
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.