STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
queAS-adenosylmethionine:tRNA ribosyltransferase-isomerase. (341 aa)    
Predicted Functional Partners:
tgt
Queuine tRNA-ribosyltransferase.
 
 0.996
queF
NADPH-dependent 7-cyano-7-deazaguanine reductase.
  
 
 0.942
queG
Epoxyqueuosine reductase.
 
  
 0.791
ruvB
Holliday junction ATP-dependent DNA helicase RuvB.
  
  
 0.778
ruvA
Holliday junction ATP-dependent DNA helicase RuvA.
  
    0.699
yhhQ
Inner membrane protein YhhQ.
 
  
 0.665
ada
Regulatory protein of adaptative response.
    
  0.578
CDZ80020.1
Bifunctional preprotein translocase subunit SecD/SecF.
  
  
 0.514
rsmB_1
Ribosomal RNA small subunit methyltransferase B.
  
    0.461
polA
DNA polymerase I.
     
 0.445
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.