STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCSuperoxide dismutase [Cu-Zn] precursor. (186 aa)    
Predicted Functional Partners:
katE
Catalase HPII.
  
 0.993
sodA
Superoxide dismutase [Mn].
   
 0.902
petB
Cytochrome b6.
    
 
 0.844
petC
Cytochrome b6-f complex iron-sulfur subunit.
    
 
 0.799
yraA
Putative cysteine protease YraA.
   
 0.767
CDZ81607.1
Chaperone protein HchA.
   
 0.767
CDZ81949.1
Conjugal pilus assembly protein TraF.
   
 0.673
cyoB
Ubiquinol oxidase subunit 1.
    
 
 0.656
cyoA
Ubiquinol oxidase subunit 2 precursor.
    
   0.611
cyoC
Cytochrome o ubiquinol oxidase subunit 3.
    
   0.611
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.