STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaB(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB. (439 aa)    
Predicted Functional Partners:
miaA
tRNA dimethylallyltransferase.
  
 0.713
rsmB_1
Ribosomal RNA small subunit methyltransferase B.
  
  
 0.545
CDZ80532.1
Hypothetical protein.
       0.504
hemE
Uroporphyrinogen decarboxylase.
   
 
 0.456
rlmN_1
Putative dual-specificity RNA methyltransferase RlmN.
 
  
 0.445
rlmN_2
Putative dual-specificity RNA methyltransferase RlmN.
 
  
 0.442
CDZ80533.1
Hypothetical protein.
       0.423
CDZ80791.1
SCAFFOLD protein.
     
 0.419
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.