STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapA4-hydroxy-tetrahydrodipicolinate synthase. (300 aa)    
Predicted Functional Partners:
dapB
4-hydroxy-tetrahydrodipicolinate reductase.
 
 
 0.998
asd2
Aspartate-semialdehyde dehydrogenase 2.
 
 
 0.967
lysC
Aspartokinase.
 
 
 0.942
dapF
Diaminopimelate epimerase.
 
 
 0.892
pld
Phospholipase D precursor.
    
  0.821
putA
Bifunctional protein PutA.
  
 
 0.798
recD_2
Exodeoxyribonuclease V alpha chain.
       0.779
CDZ81279.1
Chorismate mutase.
  
  
 0.756
glkA
Glucokinase.
  
 
 0.745
gatC
Glutamyl-tRNA(Gln) amidotransferase subunit C.
  
    0.735
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.