STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ81279.1Chorismate mutase. (133 aa)    
Predicted Functional Partners:
aroK
Shikimate kinase 1.
  
 
 0.977
aroE
Shikimate dehydrogenase.
  
 
 0.963
aroA
3-phosphoshikimate 1-carboxyvinyltransferase.
  
 
 0.919
aroC
Chorismate synthase.
  
 
 0.903
aroF
Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive.
  
 
 0.770
CDZ80470.1
50S ribosomal protein L29.
  
    0.769
entC
Isochorismate synthase EntC.
  
 
 0.766
dapA
4-hydroxy-tetrahydrodipicolinate synthase.
  
  
 0.756
rplV
50S ribosomal protein L22.
  
    0.754
rpsC
Hypothetical protein; BS2.
  
    0.750
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.