STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arnC_2Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase. (256 aa)    
Predicted Functional Partners:
CDZ81531.1
Hypothetical protein.
  
 0.912
algA
Alginate biosynthesis protein AlgA.
  
 
 0.900
CDZ79966.1
Hypothetical protein.
 
 0.866
CDZ81283.1
Sugar 1,4-lactone oxidases.
  
 
  0.701
tagH
Teichoic acids export ATP-binding protein TagH.
  
  
 0.605
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
 
  0.604
tagG
Teichoic acid translocation permease protein TagG.
  
  
 0.570
epsE_3
Putative glycosyltransferase EpsE.
 
 
  0.525
fmt
Methionyl-tRNA formyltransferase.
  
 
 0.493
CDZ81288.1
Putative urate catabolism protein.
  
 
  0.489
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.