STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ81288.1Putative urate catabolism protein. (292 aa)    
Predicted Functional Partners:
CDZ81289.1
Hypothetical protein.
 
     0.832
CDZ81531.1
Hypothetical protein.
  
 
 0.804
CDZ79966.1
Hypothetical protein.
  
 
  0.629
CDZ81286.1
Ankyrin repeat protein.
       0.546
CDZ81287.1
Hypothetical protein.
       0.546
arnC_2
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase.
  
 
  0.489
dapE
Succinyl-diaminopimelate desuccinylase.
    
  0.436
cpg2
Carboxypeptidase G2 precursor.
    
  0.436
sugE
Quaternary ammonium compound-resistance protein SugE.
  
 
 0.433
CDZ81269.1
Hypothetical protein.
  
    0.418
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.