STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDZ81500.1Putative efflux pump membrane fusion protein. (361 aa)    
Predicted Functional Partners:
CDZ81498.1
ABC exporter transmembrane subunit, DevC protein.
 
 
 0.984
ttgI
Toluene efflux pump outer membrane protein TtgI precursor.
  
  0.949
macB_3
Macrolide export ATP-binding/permease protein MacB.
 
 0.938
czcC_2
Cation efflux system protein CzcC.
  
  0.816
oprM_3
Outer membrane protein OprM precursor.
  
  0.792
oprM_4
Outer membrane protein OprM precursor.
  
  0.792
oprM_1
Outer membrane protein OprM precursor.
   
  0.787
oprM_2
Outer membrane protein OprM precursor.
   
  0.787
CDZ79953.1
Type I secretion outer membrane protein, TolC family.
   
  0.787
CDZ80193.1
Outer membrane efflux protein.
   
  0.787
Your Current Organism:
Rubidus massiliensis
NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis
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