CDZ81597.1 protein (Rubidus massiliensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CDZ81597.1

Transient-receptor-potential calcium channel protein. (495 aa)

Predicted Functional Partners:

CDZ80932.1

0.836

CDZ80930.1

0.815

CDZ81286.1

0.808

petB

0.783

CDZ79947.1

0.774

ankX_2

0.773

ankX_1

0.772

bicA

0.764

CDZ81115.1

0.761

alaS

0.756

Your Current Organism:

Rubidus massiliensis

NCBI taxonomy Id: 1444712
Other names: C. Rubidus massiliensis, Candidatus Rubidus massiliensis, Chlamydia sp. Rubis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDZ79947.1	CDZ81115.1	BN1013_00449	BN1013_01643	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Ankyrin repeat protein.	0.774
CDZ79947.1	CDZ81286.1	BN1013_00449	BN1013_01821	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Ankyrin repeat protein.	0.774
CDZ79947.1	CDZ81597.1	BN1013_00449	BN1013_02133	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Transient-receptor-potential calcium channel protein.	0.774
CDZ79947.1	ankX_1	BN1013_00449	BN1013_01456	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Phosphocholine transferase AnkX.	0.774
CDZ79947.1	ankX_2	BN1013_00449	BN1013_01617	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Phosphocholine transferase AnkX.	0.774
CDZ79947.1	bicA	BN1013_00449	BN1013_02197	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Bicarbonate transporter BicA.	0.808
CDZ79947.1	petB	BN1013_00449	BN1013_00346	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Cytochrome b6.	0.874
CDZ80930.1	CDZ81115.1	BN1013_01458	BN1013_01643	Leucine Rich repeats (2 copies).	Ankyrin repeat protein.	0.839
CDZ80930.1	CDZ81286.1	BN1013_01458	BN1013_01821	Leucine Rich repeats (2 copies).	Ankyrin repeat protein.	0.789
CDZ80930.1	CDZ81597.1	BN1013_01458	BN1013_02133	Leucine Rich repeats (2 copies).	Transient-receptor-potential calcium channel protein.	0.815
CDZ80930.1	ankX_1	BN1013_01458	BN1013_01456	Leucine Rich repeats (2 copies).	Phosphocholine transferase AnkX.	0.865
CDZ80930.1	ankX_2	BN1013_01458	BN1013_01617	Leucine Rich repeats (2 copies).	Phosphocholine transferase AnkX.	0.788
CDZ80932.1	CDZ81115.1	BN1013_01460	BN1013_01643	Leucine Rich repeats (2 copies).	Ankyrin repeat protein.	0.861
CDZ80932.1	CDZ81286.1	BN1013_01460	BN1013_01821	Leucine Rich repeats (2 copies).	Ankyrin repeat protein.	0.786
CDZ80932.1	CDZ81597.1	BN1013_01460	BN1013_02133	Leucine Rich repeats (2 copies).	Transient-receptor-potential calcium channel protein.	0.836
CDZ80932.1	ankX_1	BN1013_01460	BN1013_01456	Leucine Rich repeats (2 copies).	Phosphocholine transferase AnkX.	0.816
CDZ80932.1	ankX_2	BN1013_01460	BN1013_01617	Leucine Rich repeats (2 copies).	Phosphocholine transferase AnkX.	0.799
CDZ81115.1	CDZ79947.1	BN1013_01643	BN1013_00449	Ankyrin repeat protein.	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.774
CDZ81115.1	CDZ80930.1	BN1013_01643	BN1013_01458	Ankyrin repeat protein.	Leucine Rich repeats (2 copies).	0.839
CDZ81115.1	CDZ80932.1	BN1013_01643	BN1013_01460	Ankyrin repeat protein.	Leucine Rich repeats (2 copies).	0.861