Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T05_15594Uncharacterized protein. (72 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.657
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.622
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.599
MRE11A
Double-strand break repair protein MRE11A.
    
 0.542
TONSL
Tonsoku-like protein.
    
 0.518
C18E9.6
Mitochondrial import receptor subunit TOM40-like protein.
    
 0.514
Psmd14
26S proteasome non-ATPase regulatory subunit 14.
    
 0.503
brcc3
Lys-63-specific deubiquitinase BRCC36.
    
 0.503
BRCA1
Breast cancer type 1 susceptibility-like protein.
    
 0.449
BRCA1-2
Breast cancer type 1 susceptibility-like protein.
    
 0.449
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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