STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T05_2111Uncharacterized protein. (829 aa)    
Predicted Functional Partners:
rps30a
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.937
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.773
asf1
Histone chaperone asf1.
    
 0.674
Nid1
Nidogen-1.
     
 0.670
unc-10
Rab-3-interacting molecule unc-10.
    
  0.663
hira
Protein HIRA.
    
 0.622
RpS15Aa
40S ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.617
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.596
Rps14
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.587
T05_10174
Uncharacterized protein.
    
 0.584
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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