STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAP1GAPRap1 GTPase-activating protein 1. (888 aa)    
Predicted Functional Partners:
rap-1
Ras-related protein Rap-1.
    
 0.937
Diras2
GTP-binding protein Di-Ras2.
    
 0.804
rap-1-2
Ras-related protein Rap-1.
    
 0.804
ftt-2
14-3-3-like protein 2; Belongs to the 14-3-3 family.
    
  0.736
RAPGEF4
Rap guanine nucleotide exchange factor 4.
   
 0.721
egl-4
cGMP-dependent protein kinase egl-4.
     
 0.679
T05_13544
DDE_Tnp_1_7 domain-containing protein.
    
 0.665
T05_14031
Uncharacterized protein.
    
 0.665
RALA
Ras-related protein Ral-A.
    
 0.665
T05_9217
Uncharacterized protein.
    
 0.665
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.