STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDB1DNA damage-binding protein 1. (1830 aa)    
Predicted Functional Partners:
CUL4A
Cullin-4A; Belongs to the G-protein coupled receptor Fz/Smo family.
   
 0.999
rbx1
RING-box protein 1.
    
 0.999
Ercc8
DNA excision repair protein ERCC-8.
    
 0.999
LEO1
RNA polymerase-associated protein LEO1.
    
 
 0.998
VPRBP
Protein VPRBP.
    
 0.996
wdr76
WD repeat-containing protein 76.
    
 0.995
Crbn
Protein cereblon.
    
 
 0.981
ERCC6
DNA excision repair protein ERCC-6.
    
 0.972
Mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 
 0.962
T05_13023
Uncharacterized protein.
    
 0.961
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.