STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T05_9269APOBEC_N domain-containing protein. (867 aa)    
Predicted Functional Partners:
Kmt2e
Histone-lysine N-methyltransferase 2E.
    
 0.701
EGF1-2
Fibropellin-1.
    
 0.661
FGFR3
Fibroblast growth factor receptor 3.
    
 0.654
RET
Proto-oncogene tyrosine-protein kinase receptor Ret.
    
 0.654
F09A5.2
Putative tyrosine-protein kinase F09A5.2.
    
 0.654
rsrc2
Arginine/serine-rich coiled-coil protein 2.
    
 0.654
Flt1
Vascular endothelial growth factor receptor 1.
    
 0.654
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.645
Kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.645
Ten-m
Teneurin-m.
    
 0.636
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.