STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
K02A2.6-8Integrase catalytic domain-containing protein. (248 aa)    
Predicted Functional Partners:
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.796
MBD3
Methyl-CpG-binding domain protein 3.
    
 0.754
Rbbp7
Histone-binding protein RBBP7.
    
 0.753
Caf1
Putative histone-binding protein Caf1.
    
 0.753
rbbp4
Histone-binding protein RBBP4.
    
 0.753
RBBP7
Histone-binding protein RBBP7.
    
 0.753
Caf1-2
Putative histone-binding protein Caf1.
    
 0.753
Caf1-3
Putative histone-binding protein Caf1.
    
 0.753
rbbp7
Putative histone-binding protein lin-53.
    
 0.753
Caf1-4
Putative histone-binding protein Caf1.
    
 0.753
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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