STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbl1Retinoblastoma-like protein 1. (945 aa)    
Predicted Functional Partners:
TFDP1
Transcription factor Dp-1.
   
 0.995
Ccnd3
G1/S-specific cyclin-D3; Belongs to the cyclin family.
    
 0.971
lin-9
Protein lin-9.
   
 0.954
T05_8264
G2/mitotic-specific cyclin; Belongs to the cyclin family.
   
 0.954
lin-54
Protein lin-54.
   
 0.921
abl-1
Tyrosine-protein kinase.
    
 0.903
cki-1
Cyclin-dependent kinase inhibitor 1.
    
 0.882
Smad4
Mothers against decapentaplegic homolog.
    
 0.838
Cdk1
Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.
   
 0.820
Cdk2
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
   
 0.813
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.