STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soc-2Leucine-rich repeat protein soc-2. (561 aa)    
Predicted Functional Partners:
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.887
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.887
Dlg1
Disks large-like protein 1; Belongs to the MAGUK family.
  
 0.830
CASK
Peripheral plasma membrane protein CASK.
  
 0.815
BRAF
Serine/threonine-protein kinase B-raf.
 
  
 0.797
TONSL
Tonsoku-like protein.
   
 0.795
EEF1G
Elongation factor 1-gamma.
    
 0.761
PTK7
Inactive tyrosine-protein kinase 7; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.723
Herc4
Putative E3 ubiquitin-protein ligase HERC4.
    
 0.717
CaMKII
Calcium/calmodulin-dependent protein kinase type II alpha chain.
    
 0.714
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.