STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ifa-1Intermediate filament protein ifa-1; Belongs to the intermediate filament family. (645 aa)    
Predicted Functional Partners:
Act5C
Actin-5C.
    
 0.770
T05_8561
LEM domain-containing protein.
    
 0.766
baf-1
Barrier-to-autointegration factor 1.
   
 0.744
baf-1-2
Barrier-to-autointegration factor 1.
   
 0.744
LEMD3
Inner nuclear membrane protein Man1.
    
 0.742
unc-15
Paramyosin.
     
 0.715
unc-54
Myosin-4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.715
unc-54-2
Myosin-4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.713
RBM39
RNA-binding protein 39.
    
 0.679
HSPB1
Heat shock protein beta-1; Belongs to the small heat shock protein (HSP20) family.
   
 
 0.628
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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