STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ube4bUbiquitin conjugation factor E4 B. (1123 aa)    
Predicted Functional Partners:
trip12
E3 ubiquitin-protein ligase TRIP12.
   
 0.996
RAD23B
UV excision repair protein RAD23-like protein B.
   
 0.983
T05_5915
Ubiquitin fusion degradation protein 1-like protein.
    
 
 0.981
COX18
NSFL1 cofactor p47.
    
 
 0.963
ubc-17
Putative ubiquitin-conjugating enzyme protein 17.
   
 0.931
SPATA5
Spermatogenesis-associated protein 5.
  
 
 0.899
cdc-48.2
Transitional endoplasmic reticulum ATPase-like protein 2; Belongs to the AAA ATPase family.
  
 
 0.899
faf2-b
FAS-associated factor 2-B.
   
 
 0.882
cor-1
Coronin-like protein cor-1.
     
 0.805
Coro2a
Coronin; Belongs to the WD repeat coronin family.
     
 0.805
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.