STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDZD4PDZ domain-containing protein 4. (567 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.933
TONSL
Tonsoku-like protein.
    
 0.761
UBA52
Ubiquitin-60S ribosomal protein L40.
    
  0.757
PKDCC
Protein kinase domain-containing protein, cytoplasmic.
   
 0.708
TESK2
Peptidylprolyl isomerase.
   
 0.708
birc5.2
Baculoviral IAP repeat-containing protein 5.2.
   
 0.691
Otud7b
OTU domain-containing protein 7B.
   
 0.678
Egfr
Receptor protein-tyrosine kinase.
    
 0.677
kay
Transcription factor kayak.
    
 0.671
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
    
 0.667
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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