STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX2Transcription factor SOX-2. (419 aa)    
Predicted Functional Partners:
pan
Protein pangolin, isoforms A/H/I/S.
  
 
 0.729
SOX6
Transcription factor SOX-6.
  
 
0.687
RUNX1
Runt-related transcription factor 1.
   
 0.682
arm
Armadillo segment polarity protein.
    
 0.674
arm-2
Armadillo segment polarity protein.
    
 0.674
nhr-25
Nuclear hormone receptor family member nhr-25.
    
 0.645
SALL1
Sal-like protein 1.
    
 0.601
PRDM14
PR domain zinc finger protein 14.
    
 0.589
pou3f2-a
POU domain protein.
    
 0.573
Uckl1
Uridine kinase; Belongs to the uridine kinase family.
    
 0.559
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.