STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sf3b3Splicing factor 3B subunit 3. (1221 aa)    
Predicted Functional Partners:
T05_1312
PHD finger-like domain-containing protein 5B.
   
 0.999
T05_337
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
sf3b1
Splicing factor 3B subunit 1.
   
 0.999
Sf3b14
Pre-mRNA branch site protein p14.
    
 0.999
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
sap-49
Splicing factor 3B subunit 4.
   
 0.999
DDX42
ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family.
   
 0.998
Snrnp200
U5 small nuclear ribonucleoprotein helicase.
   
 
 0.998
SF3A2
Splicing factor 3A subunit 2.
   
 0.998
SF3A3
Splicing factor 3A subunit 3.
   
 0.998
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.