STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NamptNicotinamide phosphoribosyltransferase. (632 aa)    
Predicted Functional Partners:
mRpL9
39S ribosomal protein L9, mitochondrial.
   
 
 0.902
SIRT1
NAD-dependent protein deacetylase sirtuin-1.
     
 0.901
Mrpl17
39S ribosomal protein L17, mitochondrial.
  
 
 0.896
mrpl-32
Putative 39S ribosomal protein L32, mitochondrial.
  
 
 0.888
RPS23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.887
NMNAT1
Nicotinamide mononucleotide adenylyltransferase 1.
    
 0.883
rplT
50S ribosomal protein L20.
  
 
 0.880
mlc-4
Putative myosin regulatory light chain.
  
 
 0.871
RpL13A
60S ribosomal protein L13a.
  
 
 0.868
mRpS6
Putative 28S ribosomal protein S6, mitochondrial.
  
 
 0.866
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.