STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T05_4329Pinin_SDK_memA domain-containing protein. (758 aa)    
Predicted Functional Partners:
rnps1-a
RNA-binding protein with serine-rich domain 1-A.
   
 0.996
Bin1
Histone deacetylase complex subunit SAP18.
    
 0.995
mag-1
Protein mago nashi-like protein.
   
 0.888
SRRM1
Serine/arginine repetitive matrix protein 1.
   
 0.886
T05_5115
SAP domain-containing protein.
   
 0.882
ACIN1
Apoptotic chromatin condensation inducer in the nucleus.
   
 0.882
Eif4a3
Eukaryotic initiation factor 4A-III.
    
 0.868
Prpf4b
Serine/threonine-protein kinase PRP4-like protein.
   
 0.867
LUC7L3
Luc7-like protein 3.
   
   0.839
Pabp2
Polyadenylate-binding protein 2.
   
 0.816
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.