STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPI-2Bactericidal permeability-increasing protein. (514 aa)    
Predicted Functional Partners:
Arfrp1
ADP-ribosylation factor-related protein 1.
   
 
 0.746
R06F6.8
Protein RIC1-like protein.
     
 0.580
VPS52
Vacuolar protein sorting-associated protein 52-like protein.
     
 0.566
COG8
Conserved oligomeric Golgi complex subunit 8.
   
 
  0.539
COG1
Conserved oligomeric Golgi complex subunit 1.
   
 
 0.537
YL-1
Conserved oligomeric Golgi complex subunit 3.
     
 0.535
pno1
RNA-binding protein pno1.
     
 0.533
Rab6a
Ras-related protein Rab-6A.
     
 0.531
Cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.527
COG7
Conserved oligomeric Golgi complex subunit 7.
     
 0.517
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.