STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pat-3Integrin beta; Belongs to the integrin beta chain family. (832 aa)    
Predicted Functional Partners:
TNS
Tensin-1.
    
 0.991
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.989
Ten-m
Teneurin-m.
    
0.986
lam-2
Laminin-like protein lam-2.
    
 0.941
LAMA2
Laminin subunit alpha-2.
    
 0.934
emb-9-2
Collagen alpha-1(IV) chain.
    
 0.916
let-2
Collagen alpha-2(IV) chain.
    
 0.916
pat-2
Integrin alpha-8; Belongs to the integrin alpha chain family.
   
 0.909
TLN1
Talin-1.
   
 0.895
eys
Protein eyes shut.
    
 0.869
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.