STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSPRY1RING finger and SPRY domain-containing protein 1. (512 aa)    
Predicted Functional Partners:
Myef2
Myelin expression factor 2.
   
 0.846
Hnrnpl
Heterogeneous nuclear ribonucleoprotein L.
   
 0.769
SRSF1
Serine/arginine-rich splicing factor 1.
   
 0.730
T05_15037
Uncharacterized protein.
   
 0.710
HNRNPF
Heterogeneous nuclear ribonucleoprotein F.
   
 0.710
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
    
 0.692
T05_2796
Y-box factor-like protein.
    
 0.686
Pcbp3
Poly(RC)-binding protein 3.
   
 0.678
B52
Serine-arginine protein 55.
   
 0.655
Srsf4-2
Serine/arginine-rich splicing factor 4.
   
 0.655
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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