STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atox1Copper transport protein ATOX1. (206 aa)    
Predicted Functional Partners:
ATP7B
Copper-transporting ATPase 1.
    
 0.993
sod1
Superoxide dismutase [Cu-Zn].
    
 0.770
SOD1
Superoxide dismutase [Cu-Zn].
    
 0.748
NDUFA5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5.
   
 
 0.734
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
    
 
 0.660
UBA52
Ubiquitin-60S ribosomal protein L40.
   
 
 0.639
T05_7018
Uncharacterized protein.
    
 0.609
Mrps11
28S ribosomal protein S11, mitochondrial.
   
   0.592
rpl-26
60S ribosomal protein L26.
   
 
 0.580
mrpl-11
Putative 39S ribosomal protein L11, mitochondrial; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.574
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.