STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SrprbSignal recognition particle receptor subunit beta. (306 aa)    
Predicted Functional Partners:
Gtp-bp
Signal recognition particle receptor subunit alpha-like protein.
   
 0.998
SRP54
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
  
 
 0.966
SRP19
Signal recognition particle 19 kDa protein.
   
 
 0.951
SRP72
Signal recognition particle subunit SRP72.
    
 
 0.930
ATR
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
   0.907
Sec61a2
Protein transport protein Sec61 subunit alpha isoform 2.
   
 0.713
rpl4-b
60S ribosomal protein L4.
    
 
 0.703
RpL5
60S ribosomal protein L5.
   
   0.701
Sec63
Translocation protein SEC63-like protein.
   
 
 0.689
RPL7A
60S ribosomal protein L7a.
   
   0.661
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.