STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fam187aIg-like V-type domain-containing protein. (440 aa)    
Predicted Functional Partners:
UBA52
Ubiquitin-60S ribosomal protein L40.
    
 0.774
FURIN
Furin; Belongs to the peptidase S8 family.
    
 0.703
bli-4
Endoprotease bli-4; Belongs to the peptidase S8 family.
    
 0.703
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.665
Ube2k
Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.653
trip12
E3 ubiquitin-protein ligase TRIP12.
     
 0.645
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.640
Lhcgr
Follicle-stimulating hormone receptor.
    
 0.623
TPP2
Tripeptidyl-peptidase 2.
    
 0.611
PCSK2
Neuroendocrine convertase 2; Belongs to the peptidase S8 family.
    
 0.611
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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