STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hbHunchback-like protein. (1266 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.814
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.776
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.776
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.609
GTF3C3
General transcription factor 3C polypeptide 3.
    
 0.607
KDM6A
Lysine-specific demethylase 6A.
    
 0.605
T05_2192
Protein MEF2BNB-like protein.
  
 
  0.603
mel-26
Protein maternal effect lethal 26.
   
 0.577
rdx
Protein roadkill.
   
 0.577
ssl-1
Helicase ssl-1.
    
 0.576
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.