STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl-25.160S ribosomal protein L23a 1; Belongs to the universal ribosomal protein uL23 family. (202 aa)    
Predicted Functional Partners:
RPL7A
60S ribosomal protein L7a.
  
 0.999
rpl-41
60S ribosomal protein L44; Belongs to the eukaryotic ribosomal protein eL42 family.
  
 0.999
RpS10
40S ribosomal protein S10.
   
 
 0.999
rpl-23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.999
rps-9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
 
 0.999
rpl11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 
 0.999
Mrpl17
39S ribosomal protein L17, mitochondrial.
  
 
 0.999
RpL13A
60S ribosomal protein L13a.
  
 0.999
mlc-4
Putative myosin regulatory light chain.
  
 
 0.999
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.