STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T05_10680Histone deacetylase complex subunit SAP30-like protein. (563 aa)    
Predicted Functional Partners:
CIR1
Corepressor interacting with RBPJ 1.
    
 0.885
Ncor2
Nuclear receptor corepressor 2.
    
 0.881
Bin1
Histone deacetylase complex subunit SAP18.
     
 0.853
C32E8.3
Paired amphipathic helix protein Sin3a.
    
 0.836
Sin3a
Paired amphipathic helix protein Sin3a.
    
 0.836
Sin3b
Paired amphipathic helix protein Sin3b.
    
 0.836
Cpsf7
Suppressor of hairless protein.
     
 0.827
dri
Protein dead ringer-like protein.
    
 0.826
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.722
HDAC1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.717
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.