STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMED7Transmembrane emp24 domain-containing protein 7. (205 aa)    
Predicted Functional Partners:
sel-9
Suppressor/enhancer of lin-12 protein 9.
  
0.977
eca
Transmembrane emp24 domain-containing protein eca.
   
 0.953
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.942
MRPS35
28S ribosomal protein S35, mitochondrial.
   
 
 0.940
Mrps7
28S ribosomal protein S7, mitochondrial.
   
   0.936
DAP3
28S ribosomal protein S29, mitochondrial.
   
 
 0.936
Mrpl17
39S ribosomal protein L17, mitochondrial.
   
 
 0.928
Slit3
Slit-like protein 3 protein.
   
 0.923
MRPS2
28S ribosomal protein S2, mitochondrial.
   
 
 0.921
HIBCH
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 
 0.921
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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