STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dat-1Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (602 aa)    
Predicted Functional Partners:
unc-64
Syntaxin-1A; Belongs to the syntaxin family.
    
 0.715
glt-4
Amino acid transporter.
    
 0.604
CaMKII
Calcium/calmodulin-dependent protein kinase type II alpha chain.
    
  0.579
T05_6071
Uncharacterized protein.
    
 0.572
dop-3
Dopamine receptor 3.
    
 0.551
COX6B-2
Cytochrome c oxidase subunit 6b-2.
    
  0.506
CASK
Peripheral plasma membrane protein CASK.
   
 0.494
Ace-2
Angiotensin-converting enzyme.
    
 
 0.458
ine
Sodium-and chloride-dependent GABA transporter ine.
  
  
 
0.432
Your Current Organism:
Trichinella murrelli
NCBI taxonomy Id: 144512
Other names: T. murrelli, Trichinella T5, Trichinella murrelli Pozio & La Rosa 2000, Trichinella sp. T5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.