STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJQ97981.1TRAP-type C4-dicarboxylate transport system, periplasmic component. (332 aa)    
Predicted Functional Partners:
AJQ97983.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
 0.888
AJQ97982.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.886
AJQ92974.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.685
AJQ96137.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.626
AJQ94584.1
Hypothetical Protein.
   
 
 0.570
AJQ97984.1
Hypothetical Protein.
       0.508
AJQ96138.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.484
AJQ93556.1
Hypothetical Protein.
  
     0.473
AJQ94597.1
Hypothetical Protein.
  
     0.466
AJQ92973.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.436
Your Current Organism:
Gynuella sunshinyii
NCBI taxonomy Id: 1445510
Other names: G. sunshinyii YC6258, Gynuella sunshinyii YC6258, gamma proteobacterium YC6258
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.