STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFIO01_05400Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (329 aa)    
Predicted Functional Partners:
CFIO01_09126
Ribose 5-phosphate isomerase A.
    
 0.938
CFIO01_02395
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 0.923
CFIO01_07281
Ribose-phosphate diphosphokinase.
   
 0.921
CFIO01_05490
Ribose-phosphate diphosphokinase.
   
 0.921
CFIO01_09058
Ribose-phosphate diphosphokinase.
   
 0.921
CFIO01_02021
Phosphoglucomutase/phosphomannomutase; Belongs to the phosphohexose mutase family.
    
 0.920
CFIO01_06022
Ribose 5-phosphate isomerase.
  
 
 0.916
CFIO01_03075
Ribose 5-phosphate isomerase B.
  
 
 0.916
CFIO01_01726
SNO glutamine amidotransferase.
     
 0.829
CFIO01_01727
Pyridoxine biosynthesis protein; Belongs to the PdxS/SNZ family.
     
 0.811
Your Current Organism:
Colletotrichum fioriniae
NCBI taxonomy Id: 1445577
Other names: C. fioriniae PJ7, Colletotrichum fioriniae PJ7
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