STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AH67_08390Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)    
Predicted Functional Partners:
AH67_08395
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.990
AH67_08520
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
AH67_08590
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.966
AH67_00705
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.949
AH67_02835
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.939
AH67_08275
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.927
AH67_08405
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
AH67_08385
Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.793
AH67_01110
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.754
AH67_00985
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.701
Your Current Organism:
Bifidobacterium pseudolongum
NCBI taxonomy Id: 1447715
Other names: B. pseudolongum PV8-2, Bifidobacterium pseudolongum PV8-2
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