STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AH68_01985Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
AH68_01990
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
AH68_01995
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
AH68_01975
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.981
AH68_03400
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.885
AH68_00575
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.876
AH68_03395
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.874
AH68_03370
Glutamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.862
AH68_02595
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.855
AH68_02770
Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.822
AH68_07855
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.779
Your Current Organism:
Bifidobacterium kashiwanohense
NCBI taxonomy Id: 1447716
Other names: B. kashiwanohense PV20-2, Bifidobacterium kashiwanohense PV20-2
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